BIOLOGY 103
        LAB 4:  CREEK EXPERIMENT

 
Scenibig


THE EXPERIMENT

This lab is the second of several for investigating biodiversity. The report, which you may write alone or with one partner is due Monday. You will do an experiment to test the oldest law of ecology
[This link is  to a reference in Science Magazine; you need to use a library terminal if you want to verify the documentation]:

von Humboldt's Law:

Larger areas have more species than smaller ones.

Before you say, "Well, of course, there's more room," you should realize that the law applies to equal sizes of samples from areas of different sizes. For example, 1000 square meters anywhere within a huge forest would have more kinds of trees than 1000 square meters within a similar, but smaller, forest. Both samples might have the same number of tree, but the sample from the smaller forest might have 50 oak trees and 50 hickory trees while the sample from the larger forest could have 40 oaks and 30 hickories and 10 maples and 20 dogwoods--the same total number of trees but more species and thus higher species richness and more biodiversity.

In today's lab, you will be counting microscopic critters instead of trees. You will be given samples from two containers or creeks or the rocks or sticks in them, like last week only better. Using a microscope, you will try to find at least 50 critters in a sample and the same number from a different sample, from an area of a larger size. As you find the critters on your slides, use a table or some other method like last week to "virtually sort" them into different species, describing or drawing or naming the different types. Out of 100 critters in both samples, you may have only one or two species, or you may find more types of critters.  No matter how many species you may have on your slide, you should include only the first 50 individual critters you come to, even if they're all in the same species.  Include algae, but not detritus or dead exoskeletons or fibers.   

Before you begin, think through your planned experiment and try to figure out how to remove any sources of bias and all possible variables (except the size of the habitats or areas).  Remember, your experimental group and your control group (or in this case, the sample from the big area and the sample from the small area) should be treated exactly the same.

  If you have time or a partner, you can repeat this procedure for both areas so that you have "sorted" more than 200 critters, but be sure to examine the samples from the two areas exactly the same. Why?  If you're working with a partner, you should start with different samples from two different areas until you count 50 each.  Then switch to samples from your partner's area.  Why do you think this is better than having one look at one area and the partner look at a totally different sample?

Do not tabulate critters smaller than 50 µm (=0.05 mm) long; in other words, ignore critters which look like nothing more than a dot at the lowest power of your microscope. 

Identifying the species you find:  The goal is to figure out how many species you have in each sample. It's not necessary to identify or name each species, but you do need to try our critter ID key to figure out at least general categories, like "insect" or "protozoa" or "algae."  Then if you have two different types of protozoa, you could just record them as "protozoa a" and "protozoa b."   If you have time and skill, however, you could use the reference sources on the internet (linked to the critter ID key) to get more specific. 

THE REPORT

  • The report, which you may write alone or with one partner, is due Monday.
  • The report must have the "Results" and "Conclusion" sections in standard report form format (column on the right).
    • The "Results" section must have
      1. a heading
      2. at least one sentence
      3. (most important) a graph (not a table) comparing the number of species in the samples from two different locations.
    • The "Conclusion" section must have
      1. a heading
      2. A statement like this:  "I reject [or do not reject] this hypothesis because . . ."
        If you need help, REVIEW the chapter 1 study guide or practice some of the problems from Lab 1

HOW YOUR GRAPH WILL BE GRADED

DETAILS FOR MAKING A GRAPH, IN DESCENDING ORDER OF IMPORTANCE

  1. Does it make its point effectively?  Ooops.   Do you have a point to make?  Do you think you found some pattern or difference in diversity?  Sometimes playing with the graph is what reveals the point.   Then you might want to revise your graph to make sure that it emphasizes the point you want to make.
  2. Are your data from Lab 2 "summarized" and organized so that the graph clearly and accurately shows a comparison of  species diversity (or variety of kinds), not just how many critters you saw?

  3. Is everything labeled correctly?
    • title
    • both axes?
    • all units of measurement? (remember, units must be metric!)
    • the sources of any data you didn't collect personally?
    • anything else which would not make sense unless labeled?
    • your name?
  4. Have you followed good conventional practice?
  • Did you put the dependent variable (=the "results" of your analysis) on the "y" (vertical or left) axis? Scientists and other scholars expect to see the important results as differences in "height" on a graph. There are exceptions like the graph on text page 11, but unless your circumstances are truly exceptional you should do your graphs with the results on the vertical axis.
  • Have you chosen reasonable scales and ranges so that your data are not scrunched up in one little corner of the graph?
  • Have you identified all abbreviations (except metric units) and calculations? A good place to do so is just after the title.
  • Have you avoided exaggeration or other misrepresentation of data? (You might want to attach your original data if your graph looks too good to be true.) A graph which has been criticized is the one reproduced as fig. 51.12b on text page 999 (vol. 2). (It's in almost every science textbook published these days.) What could be changed to make it more "honest"?

Be sure to attach your conclusion to your graph for the final Lab 2 grade.

SOME OPTIONAL HINTS

  1. While your grade won't be lowered by hand-drawing the graph (even on note-book paper), using a computer spreadsheet program like Excel or Lotus 123 could help you avoid errors (or, at least, easily correct your errors without redrawing the whole graph). It will also save you time in the long run, since making graphs is a marketable career skill that you'll get to practice throughout this course. If you first summarize and organize your data on a spreadsheet table, it's usually easy to turn it into a spreadsheet graph. You may want to get help before lab time in the computer center. If we have time, we'll help you during the lab period.

  2. Whether you should use a bar graph or a histogram or an "x-y" graph depends mostly on how you summarize and organize your original data. Don't worry if your graph looks different from someone else's.  There are thousands of correct possibilities.
  3. Look at the graphs in your textbook.  Most of them are great examples, especially these:  p. 13, 20, 64, 77, 213 (especially "b" with scales on both axes), 276, 281
  4. In the lab are some books with examples of good graphs.  Here are links to other examples:
    1. http://www.consecol.org/Journal/vol4/iss1/art15/figure6.html. This is a typical scientific graph like almost anybody could make using Excel or other spreadsheet software.  Or you could draw it with a pencil.  Notice that it has almost everything a graph is supposed to have (title, labels, scales, legend) and technically it is more or less correct. But does it make its point clearly?  Can you think of "tricks" which could improve this graph?
    2. http://www.consecol.org/Journal/vol4/iss1/art15/figure8.html.   Another typical scientific graph--technically more or less ok.  Notice that it's ok to put bars and "connect-the-dots" on the same picture.  In fact, if the turtle data were presented as bars just like the shrimping data, we would have more of a problem seeing the point.  The point seems clearer than in the previous graph, but a skeptic would wonder about the averages presented in both these graphs; was there a lot of variation in the data?  Are the differences between the pairs of bars really as clear-cut as the graph implies? 
    3. http://www.consecol.org/Journal/vol4/iss1/art1/figure6.html   from "Toward a Panther-centered View of the Forests of South Florida" (http://www.consecol.org/Journal/vol4/iss1/art1/index.html   ) 
      Notice
      1. The actual results are the circles; and the curve was calculated (not eye-balled) to emphasize the trend and to emphasize the point.
      2. the title is very descriptive
      3. both axes labeled and marked in reasonable scales and ranges
      4. units (%) are on the vertical axis, but none on the horizontal axis because "D" is like a ratio. 
    4. http://www.consecol.org/Journal/vol4/iss1/art1/figure7.html     Here the panther authors want you to be able to compare two perspectives, "A" and "B."  They put them side by side, and use the same vertical axis labels for both perspectives
    5. http://www.consecol.org/Journal/vol4/iss1/art1/figure10.html.    Here they put the two perspectives on one graph.  Notice the details in the title and the label on the vertical axis.

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What you need to know from this lab for future tests

  • How to interpret almost any graph in our textbook and other graphs in conventional scientific formats.
  • You could be asked to identify or discuss the possible sources of bias in the graph you drew or in other graphs.
  • On upcoming quizzes and tests and lab reports throughout the course, you must be able to nterpret and summarize experiments and research news stories.
  • Be able to explain what von Humboldt's Law really means.
  • Be able to define these terms:  species, species richness, biodiversity, protozoa, algae,  metric system, µm and  mm (both measures of length; 1000 µm = 1 mm; 50 µm (=0.05 mm) is the size of a dot at the lowest power of your microscope).
  • You could be asked to identify or discuss the possible sources of experimental error or bias in the procedures for collecting and counting critters.

Additional References for independent experiments (not needed for Lab 4):

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